Explore Workflows

https://github.com/reanahub/reana-demo-worldpopulation.git

Path: workflow/cwl/worldpopulation-slurmcern.cwl

Branch/Commit ID: b5cbebcc97f2c71396203257ba98deb01de59697

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5

https://github.com/YeoLab/eclip.git

Path: cwl/wf_demultiplex_pe.cwl

Branch/Commit ID: b389f7fe3e76cb6e3f31c3a8e2e3b59bb400e74c

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_pe.cwl

Branch/Commit ID: b389f7fe3e76cb6e3f31c3a8e2e3b59bb400e74c

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines12-wf.cwl

Branch/Commit ID: 4fe434e969c93c94b690ba72db295d9d52a6f576

https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/tnsnv-distr.cwl

Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653

https://github.com/pvanheus/demo_cwl.git

Path: demo.cwl

Branch/Commit ID: 995f7a0f4abb704bbe3772af45b8aa6e01404771

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5

RNA-seq 02 trimming - reads: SE

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl

Branch/Commit ID: 487af88ef0b971f76ecd1a215639bb47e3ee94e1

https://github.com/genome/cancer-genomics-workflow.git

Path: docm/workflow.cwl

Branch/Commit ID: ab3cc1f460146c60d7de417508f0c1ea70506e6a