Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph taxcheck.cwl

Perform taxonomic identification tasks on an input genome

https://github.com/ncbi/pgap.git

Path: taxcheck.cwl

Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
workflow graph exome alignment and germline variant detection

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/germline_exome.cwl

Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7
workflow graph cram_to_bam workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_bam_and_index.cwl

Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a
workflow graph SoupX - an R package for the estimation and removal of cell free mRNA contamination

Devel version of Single-Cell Advanced Cell Ranger Pipeline (SoupX) =================================================================

https://github.com/datirium/workflows.git

Path: workflows/soupx.cwl

Branch/Commit ID: 64f7fe4438898218fd83133efa25251078f5b27e
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 5d5a1d1b3777074c9a7114074a24b502b5667f02
workflow graph fastq_clean_se.cwl

https://github.com/NCI-GDC/gdc-mirnaseq-cwl.git

Path: workflows/mirnaseq_automation/fastq_clean_se.cwl

Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3
workflow graph 01-qc-se.cwl

RNA-seq 01 QC - reads: SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl

Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854
workflow graph conditional_se_fastq_trimming.cwl

https://github.com/NCI-GDC/gdc-mirnaseq-cwl.git

Path: workflows/mirnaseq_automation/conditional_se_fastq_trimming.cwl

Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3
workflow graph 04-quantification-se-unstranded.cwl

RNA-seq 04 quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-se-unstranded.cwl

Branch/Commit ID: 8d02684ae0ff27e641f3704686e3bc8b1979b854
workflow graph count-lines7-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines7-wf.cwl

Branch/Commit ID: 9a8e654a91ea5d26e8452dd1cecf3faf22b7a12e