Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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exome alignment with qc
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![]() Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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exome alignment and somatic variant detection
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![]() Path: definitions/pipelines/somatic_exome_nonhuman.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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cram_to_bam workflow
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![]() Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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htseq_workflow.cwl
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![]() Path: workflows/subworkflows/htseq_workflow.cwl Branch/Commit ID: 1ba6b619154cf892c45dec3977fbd25153bcebab |
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BAM to BEDPE
Comvert BAM to BEDPE and compress the output |
![]() Path: workflows/File-formats/bamtobedpe-gzip.cwl Branch/Commit ID: f9447c1ac522e17531097c93a169a1a31453e874 |
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stage_data_workflow.cwl
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![]() Path: workflows/subworkflows/stage_data_workflow.cwl Branch/Commit ID: 1ba6b619154cf892c45dec3977fbd25153bcebab |
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upload_results_workflow.cwl
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![]() Path: workflows/subworkflows/upload_results_workflow.cwl Branch/Commit ID: 1ba6b619154cf892c45dec3977fbd25153bcebab |
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Raw sequence data to BQSR
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![]() Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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Per-region pindel
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![]() Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: b8000c793d6e7ce4d690406c4f914c5c62acd51f |
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chipseq-header.cwl
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![]() Path: metadata/chipseq-header.cwl Branch/Commit ID: 10ce6e113f749c7bd725e426445220c3bdc5ddf1 |