Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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ValidateArrayElementCoordinates
Plot and compare array element coordinates. Validate coordinate transformation from those used in observatory database to simulation systems. |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateArrayElementCoordinates.cwl Branch/Commit ID: main |
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AcceptParameterWorkflowMissing
this is a placeholder for a missing acceptance workflow. |
https://github.com/gammasim/workflows.git
Path: workflows/AcceptParameterWorkflowMissing.cwl Branch/Commit ID: main |
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Immunotherapy Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/immuno.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37 |
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bam_readcount workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 60d8a9e6c5f571ec9b37f10290a1f4613013f3e1 |
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revsort_datetime.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/revsort_datetime.cwl Branch/Commit ID: 8b0cacc5510eb3eed4e6d6db4bb844cc6114b1dc |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-fastq.workflow.cwl Branch/Commit ID: d9cf22cd615542c94f7974e8bce4cf29b24d985f |
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rnaseq-pe.cwl
Runs RNA-Seq BioWardrobe basic analysis with pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-pe.cwl Branch/Commit ID: master |
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phaseup-concat.cwl
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https://git.astron.nl/RD/VLBI-cwl.git
Path: workflows/phaseup-concat.cwl Branch/Commit ID: c8adbbe43d59cea1b1bc31e2867258016f0b6a7b |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: 80e263dce62ab113ab841e7cd99f5c20d5b24a96 |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37 |
