Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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transform_pack.cwl#fastq_clean_pe.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b Packed ID: fastq_clean_pe.cwl |
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format_rrnas_from_seq_entry
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https://github.com/ncbi/pgap.git
Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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02-trim-se.cwl
ATAC-seq 02 trimming - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/02-trim-se.cwl Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134 |
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sam_to_fastq_workflow.cwl
sam to fastq workflow |
https://github.com/CRI-iAtlas/iatlas-workflows.git
Path: Sam_to_Fastq/workflow/sam_to_fastq_workflow.cwl Branch/Commit ID: f93af9326dcc4c87a7e3907c8d969eb3788c072b |
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joint genotyping for trios or small cohorts
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/joint_genotype.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405 |
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Run genomic CMsearch
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1 |
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transform_pack.cwl#conditional_markduplicates.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b Packed ID: conditional_markduplicates.cwl |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: ecf044f3a5a7589cb2238487a19f22863c2bcdb1 |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1 |
