Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Hello World

Outputs a message using echo

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/hello-workflow.cwl

Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b
workflow graph Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass3.cwl

Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
workflow graph 03-map-pe-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: PE - blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe-blacklist-removal.cwl

Branch/Commit ID: 8aabde14169421a7115c5cd48c4740b3a7bd818f
workflow graph FASTQ to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/fastq_to_bqsr.cwl

Branch/Commit ID: cc3e7f1ccfdc7101c22bf88792608504eea7d53a
workflow graph bwa-alignment.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/bwa-alignment.cwl

Branch/Commit ID: 0e21d424267367d9dae7b980438ddee14c31a445
workflow graph exome alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome.cwl

Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
workflow graph salmon_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/salmon/paired_end/salmon_wf_pe.cwl

Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3
workflow graph salmon_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/salmon/single_end/salmon_wf_se.cwl

Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3
workflow graph format_rrnas_from_seq_entry

https://github.com/ncbi/pgap.git

Path: task_types/tt_format_rrnas_from_seq_entry.cwl

Branch/Commit ID: 6ac47e5703d8c8cdac698de91143829b3911e9b2
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5