Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/2other_species/workflow.cwl Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 67f56d3b9c70ad56019ed8aa8d50a128e02be43b |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_md5checksums/workflow.cwl Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d |
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bam_readcount workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014 |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: f2bd4687f06f85ea848b6f1ce04ec97f48525334 |
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Compute library complexity
This workflow compute library complexity |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/bedtools-bam-pbc.cwl Branch/Commit ID: 3b9736a19eed3efc8f6cc587df282aad4f50a2ee |
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readme-assembly-workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_create_readme/readme-assembly-workflow.cwl Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d |
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metabarcode (gene amplicon) analysis for fastq files
protein - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/metabarcode-fastq.workflow.cwl Branch/Commit ID: 9aba38fd1569287b7256ace7163ac84320909f8a |
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genomics-workspace-cds.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-cds.cwl Branch/Commit ID: 45bb8fc5cc5e5fee3f29099469621a53d084757d |
