Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	cnv_manta CNV Manta calling	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_manta.cwl Branch/Commit ID: de9cb009f8fe0c8d5a94db5c882cf21ddf372452
	RNA-seq alelle specific pipeline for single-read data Allele specific RNA-Seq single-read workflow	https://github.com/datirium/workflows.git Path: workflows/allele-rnaseq-se.cwl Branch/Commit ID: 6bf56698c6fe6e781723dea32bc922b91ef49cf3
	Transcripts annotation workflow	https://github.com/EBI-Metagenomics/workflow-is-cwl.git Path: workflows/TranscriptsAnnotation-wf.cwl Branch/Commit ID: 26dad276bac124f89086268bcbca962a5c0caca6
	rnaseq-pe.cwl RNA-Seq basic analysis workflow for paired-end experiment.	https://github.com/datirium/workflows.git Path: workflows/rnaseq-pe.cwl Branch/Commit ID: cf107bc24a37883ef01b959fd89c19456aaecc02
	allele-alignreads-se-pe.cwl Workflow maps FASTQ files from `fastq_files` input into reference genome `reference_star_indices_folder` and insilico generated `insilico_star_indices_folder` genome (concatenated genome for both `strain1` and `strain2` strains). For both genomes STAR is run with `outFilterMultimapNmax` parameter set to 1 to discard all of the multimapped reads. For insilico genome SAM file is generated. Then it's splitted into two SAM files based on strain names and then sorted by coordinates into the BAM format. For reference genome output BAM file from STAR slignment is also coordinate sorted.	https://github.com/datirium/workflows.git Path: subworkflows/allele-alignreads-se-pe.cwl Branch/Commit ID: a9551ece898f619167db58e4b74a6cae2d7f7d13
	scatter-wf4.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/scatter-wf4.cwl Branch/Commit ID: 20d664eff23e59aa57908345bfdb1ceeab3438f2 Packed ID: main
	Nested workflow example	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/nested.cwl Branch/Commit ID: 4c905b830371eee45188a53510ba0ee9113fd4c8
	step-valuefrom4-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/step-valuefrom4-wf.cwl Branch/Commit ID: 9a23706ec061c5d2c02ff60238d218aadf0b5db9
	count-lines10-wf.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/count-lines10-wf.cwl Branch/Commit ID: f997d13af87216e9b5048c732a511053c7ba714c
	unifiedgenotyper.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/variant_calling/unifiedgenotyper.cwl Branch/Commit ID: 342c8a39d5823bbcf298d2f807ec235910e5f412