Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bacterial_orthology	https://github.com/ncbi/pgap.git Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	SSU-from-tablehits.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 50d7ce38168d5ad79dc413ec210188626449050a
	RNA-Seq alignment and transcript/gene abundance workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405
	wf-variantcall.cwl	https://github.com/bcbio/bcbio_validation_workflows.git Path: somatic-giab-mix/somatic-giab-mix-workflow/wf-variantcall.cwl Branch/Commit ID: af9a5621efcb44c249697d6df071fe4defe389ac
	pipeline-se-blacklist-removal.cwl ATAC-seq pipeline - reads: SE - with blacklist removal	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl Branch/Commit ID: 8aabde14169421a7115c5cd48c4740b3a7bd818f
	03-map-se.cwl ATAC-seq 03 mapping - reads: SE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/03-map-se.cwl Branch/Commit ID: 67e8ccd5abddbd9e27f23ceeb95536fecf792d93
	Get Proteins	https://github.com/ncbi/pgap.git Path: wf_bacterial_prot_src.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1