Explore Workflows

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Graph Name Retrieved From View
workflow graph THOR - differential peak calling of ChIP-seq signals with replicates

What is THOR? -------------- THOR is an HMM-based approach to detect and analyze differential peaks in two sets of ChIP-seq data from distinct biological conditions with replicates. THOR performs genomic signal processing, peak calling and p-value calculation in an integrated framework. For more information please refer to: ------------------------------------- Allhoff, M., Sere K., Freitas, J., Zenke, M., Costa, I.G. (2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research, epub gkw680.

 https://github.com/datirium/workflows.git

Path: workflows/rgt-thor.cwl

Branch/Commit ID: 480e99a4bb3046e0565113d9dca294e0895d3b0c
workflow graph star-cufflinks_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/star-cufflinks/single_end/star-cufflinks_wf_se.cwl

Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3
workflow graph foreign_screening.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/foreign_screening.cwl

Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
workflow graph exome alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_exome.cwl

Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
workflow graph advanced-header.cwl

https://github.com/datirium/workflows.git

Path: metadata/advanced-header.cwl

Branch/Commit ID: 2005c6b7f1bff6247d015ff6c116bd9ec97158bb
workflow graph tophat2-cufflinks_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/tophat2-cufflinks/paired_end/tophat2-cufflinks_wf_pe.cwl

Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3
workflow graph foreign_screening.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/foreign_screening.cwl

Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a
workflow graph 04-peakcall-se.cwl

ATAC-seq 04 quantification - SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl

Branch/Commit ID: 487af88ef0b971f76ecd1a215639bb47e3ee94e1
workflow graph star-stringtie_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/star-stringtie/single_end/star-stringtie_wf_se.cwl

Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3
workflow graph hisat2-stringtie_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/hisat2-stringtie/single_end/hisat2-stringtie_wf_se.cwl

Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3