Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph umi duplex alignment fastq workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_umi_duplex.cwl

Branch/Commit ID: master
workflow graph orgaquant_wf.cwl

https://github.com/alexandersenf/orgaquant.git

Path: orgaquant_wf.cwl

Branch/Commit ID: 1.1
workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: 1.0.0
workflow graph Unaligned BAM to BQSR and VCF

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph bwa_se.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/bwa_se.cwl

Branch/Commit ID: b110a23e2efaaadfd4feca4f9e130946d1c5418d
workflow graph cnv.cwl

Copynumber variation workflow, runs ADTEx and Varscan

 https://github.com/BD2KGenomics/dockstore_workflow_cnv.git

Path: cnv.cwl

Branch/Commit ID: 1.0.1
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: e1b0fce
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: f993cad
workflow graph scatter2.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter2.cwl

Branch/Commit ID: 20f01e04328537714e57d136e242d3e7a9d44266
workflow graph kmer_cache_retrieve

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: master