Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Replace legacy AML Trio Assay

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/aml_trio_cle.cwl

Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223
workflow graph WGS QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095
workflow graph WGS QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: 040a3d1a719736d7fce6db83702d3fb7f9d69eac
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: 040a3d1a719736d7fce6db83702d3fb7f9d69eac
workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: 040a3d1a719736d7fce6db83702d3fb7f9d69eac
workflow graph count-lines11-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines11-wf.cwl

Branch/Commit ID: 0f4324ed32fbe5c7e53600e10e3d2941db618035
workflow graph super-enhancer.cwl

Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl)

https://github.com/barski-lab/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: 4723ce567089dc9ee51e067b813c5b527a3da16a
workflow graph qiime2 DADA2 detect/correct sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb

Packed ID: qiime2-03-dada2.cwl
workflow graph io-union-input-default-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/io-union-input-default-wf.cwl

Branch/Commit ID: 4feec74019b56dc5c51be905a208ff90797661de
workflow graph hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl

Branch/Commit ID: d1fdfc7b5cc8d7ceab92c283ff0f86e90ae21390