Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8 |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 68eda647259849ca81ac0bb07a24bc8a4465a630 |
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taxcheck.cwl
Perform taxonomic identification tasks on an input genome |
https://github.com/ncbi/pgap.git
Path: taxcheck.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
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strelka workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c |
