Explore Workflows

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Graph Name Retrieved From View
workflow graph assemble.cwl

Assemble a set of reads using SKESA

https://github.com/ncbi/pgap.git

Path: assemble.cwl

Branch/Commit ID: 7cee09fb3e33c851e4e1dfc965c558b82290a785
workflow graph maf-processing-pair.cwl

https://github.com/mskcc/argos-cwl.git

Path: modules/pair/maf-processing-pair.cwl

Branch/Commit ID: 54c9e02751dc65607f0e334c0eb1a5e646cc71d6
workflow graph FastQC - a quality control tool for high throughput sequence data

FastQC - a quality control tool for high throughput sequence data ===================================== FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. The main functions of FastQC are: - Import of data from FastQ files (any variant) - Providing a quick overview to tell you in which areas there may be problems - Summary graphs and tables to quickly assess your data - Export of results to an HTML based permanent report - Offline operation to allow automated generation of reports without running the interactive application

 https://github.com/datirium/workflows.git

Path: workflows/fastqc.cwl

Branch/Commit ID: 104059e07a2964673e21d371763e33c0afeb2d03
workflow graph tt_kmer_compare_wnode

Pairwise comparison

 https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_compare_wnode.cwl

Branch/Commit ID: 1b9094d70f620bb2e51072dd2150150aa4927439
workflow graph tt_fscr_calls_pass1

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49
workflow graph extract_gencoll_ids

https://github.com/ncbi/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: 1b9094d70f620bb2e51072dd2150150aa4927439
workflow graph Detect Variants workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/detect_variants.cwl

Branch/Commit ID: 336f7d1af649f42543baa6be2594cd872919b5b5
workflow graph 04-peakcall-pe.cwl

ATAC-seq 04 quantification - PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl

Branch/Commit ID: 67e8ccd5abddbd9e27f23ceeb95536fecf792d93
workflow graph 01-map-se.cwl

DNase-seq 01 mapping - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/DNase-seq_pipeline/01-map-se.cwl

Branch/Commit ID: 1a0dd34d59ec983d1f7ad77bff35da2f016e3134
workflow graph kmer_build_tree

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_build_tree.cwl

Branch/Commit ID: 1b9094d70f620bb2e51072dd2150150aa4927439