Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Chipseq alignment with qc and creating homer tag directory

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/chipseq.cwl

Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4
workflow graph fail-unconnected.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/fail-unconnected.cwl

Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b
workflow graph bact_get_kmer_reference

https://github.com/ncbi/pgap.git

Path: task_types/tt_bact_get_kmer_reference.cwl

Branch/Commit ID: f5d70f3ad365a2c017fab1c9654c88bc1caf41aa
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
workflow graph search.cwl#main

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/search.cwl

Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b

Packed ID: main
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
workflow graph kfdrc_process_se_readslist2.cwl

https://github.com/inab/kf-alignment-workflow.git

Path: subworkflows/kfdrc_process_se_readslist2.cwl

Branch/Commit ID: 425c6561b6c52139190666b761cb0350cfd8ad9c
workflow graph kfdrc_bam_to_gvcf.cwl

https://github.com/inab/kf-alignment-workflow.git

Path: subworkflows/kfdrc_bam_to_gvcf.cwl

Branch/Commit ID: 425c6561b6c52139190666b761cb0350cfd8ad9c
workflow graph kfdrc_process_bamlist.cwl

https://github.com/inab/kf-alignment-workflow.git

Path: subworkflows/kfdrc_process_bamlist.cwl

Branch/Commit ID: 425c6561b6c52139190666b761cb0350cfd8ad9c
workflow graph fp_filter workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/fp_filter.cwl

Branch/Commit ID: 046e980d131ebaf71f76599a749e2294c40c9d0d