Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph contamination_foreign_chromosome

This workflow detect and remove foreign chromosome from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/contamination-foreign-chromosome-blastn.cwl

Branch/Commit ID: 11f70a71cb68b3960c2d410ba1fdcd3b8a7e1419
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: 7bb76f33bf40b5cd2604001cac46f967a209c47f
workflow graph metaphlan_wfl.cwl

https://github.com/stevetsa/metaphlan-sbcgc.git

Path: metaphlan_wfl.cwl

Branch/Commit ID: 9b824c91cebb726f8e7d87c5f1f5760333fed9be
workflow graph exome alignment and somatic variant detection for cle purpose

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_cle.cwl

Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8
workflow graph Apply filters to VCF file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/filter_vcf_nonhuman.cwl

Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
workflow graph Hello World

Outputs a message using echo

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/hello-workflow.cwl

Branch/Commit ID: 1eb6bfe3c77aebaf69453a669d21ae7a5a78056f
workflow graph taxonomy_check_16S

https://github.com/ncbi/pgap.git

Path: task_types/tt_taxonomy_check_16S.cwl

Branch/Commit ID: 4b73bfeb967ee9f57a0410276f7c39e784f0846f
workflow graph bam to trimmed fastqs and biscuit alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl

Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4
workflow graph gathered exome alignment and somatic variant detection for cle purpose

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_cle_gathered.cwl

Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c