Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
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exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
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Unaligned to aligned BAM
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
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Replace legacy AML Trio Assay
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
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kmer_top_n_extract
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 41dfc42a730087189122a2f74b2f547a4665a225 |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
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io-int-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/io-int-wf.cwl Branch/Commit ID: f24c797ea017a467185b516ea4862c9c494c9d33 |
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Whole genome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735 |
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ChIP-seq peak caller workflow MACS2 based
This workflow execute peak caller and QC for ChIP-seq using MACS2 |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl Branch/Commit ID: 33123d6a92bf0038951820d0d2c9cf501ae2ebf6 |
