Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Cell Ranger Count Gene Expression

Cell Ranger Count Gene Expression =================================

 https://github.com/datirium/workflows.git

Path: workflows/single-cell-preprocess-cellranger.cwl

Branch/Commit ID: 480e99a4bb3046e0565113d9dca294e0895d3b0c
workflow graph THOR - differential peak calling of ChIP-seq signals with replicates

What is THOR? -------------- THOR is an HMM-based approach to detect and analyze differential peaks in two sets of ChIP-seq data from distinct biological conditions with replicates. THOR performs genomic signal processing, peak calling and p-value calculation in an integrated framework. For more information please refer to: ------------------------------------- Allhoff, M., Sere K., Freitas, J., Zenke, M., Costa, I.G. (2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research, epub gkw680.

 https://github.com/datirium/workflows.git

Path: workflows/rgt-thor.cwl

Branch/Commit ID: 09267e79fd867aa68a219c69e6db7d8e2e877be2
workflow graph workflow1.cwl

https://github.com/petehague/stoa.git

Path: actions/workflow1.cwl

Branch/Commit ID: ad2f292d7586aba6b1c4f229ab041404c4dc0413
workflow graph Instac stage-in

Stage-in using Instac

 https://github.com/EOEPCA/app-vegetation-index.git

Path: instac.cwl

Branch/Commit ID: f346f1024f124ebb9e193e3bd49559a3e5334f8b

Packed ID: main
workflow graph GRO_run_nested.cwl

https://github.com/JFRudzinski/CWL_example.git

Path: test_workflow_notables_clean/nested_workflow/GRO_run_nested.cwl

Branch/Commit ID: 96a8ff1c04802aad7d41befc8e942adc9ce0c048
workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA24385-sv/NA24385-sv-workflow/wf-alignment.cwl

Branch/Commit ID: af9a5621efcb44c249697d6df071fe4defe389ac
workflow graph running cellranger mkfastq and count

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: ece70ac30cd87100a70f7dc64d08fa72724e9416
workflow graph kallisto_wf_pe.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/kallisto/paired_end/kallisto_wf_pe.cwl

Branch/Commit ID: f85f2cd5d888ed947f47a391eb32dcb53265f9b3
workflow graph assm_assm_blastn_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_assm_assm_blastn_wnode.cwl

Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd
workflow graph cache_asnb_entries

https://github.com/ncbi/pgap.git

Path: task_types/tt_cache_asnb_entries.cwl

Branch/Commit ID: 4e2a295bb6c8b4982402ee80538a0cdb8ee6b6dd