Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: 11cba46ea263315d4d66e86819718fa157e927b1 |
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extract_capture_kit_http.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/extract_capture_kit_http.cwl Branch/Commit ID: a3eec6c1081d28efe00a0d269fb41303acc4ccdd |
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kallisto_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/kallisto/paired_end/kallisto_wf_pe.cwl Branch/Commit ID: 85c5420fad00cc6ecefb08d3be999e82d4a69bae |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi/pgap.git
Path: pgap.cwl Branch/Commit ID: 68058b108cb5b0b72ebe244c42eefa2747e1d64a |
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gathered exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/gathered_somatic_exome.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 49732e54e2fe2eafd2f82df3c482c73e642f6d64 |
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chksum_for_a_corrupted_xam_file.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_a_corrupted_xam_file.cwl Branch/Commit ID: d9598c0b0402ce5282163cd9f44218f907645052 |
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cluster_blastp_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 807fe40bca1fbd18ede6250851b9f71de98da69b |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 4b5970dcf08bac2598e62ffd2673e67a25004c40 |
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upload_results.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/utils/upload_results.cwl Branch/Commit ID: 3657003ce9fafd0e1916914ec5bf5fd3f28aedaf |
