Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Chipseq alignment for mouse with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq_alignment_mouse.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 68eda647259849ca81ac0bb07a24bc8a4465a630
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/fgomez02/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 9c9e6a6a48eb321804ce772a2c2c12b4f2f32529
	scatter-valuefrom-wf6.cwl	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf6.cwl Branch/Commit ID: 9a8e654a91ea5d26e8452dd1cecf3faf22b7a12e
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752
	taxonomy_check_16S	https://github.com/ncbi/pgap.git Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 9ff3e17888a15f4691ba82380472317214e20a1c
	fp_filter workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 00df82a529a58d362158110581e1daa28b4d7ecb
	rRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/rRNA_selection.cwl Branch/Commit ID: 6c856cd2d7dd1c21016341feb942ada0fb5630cb
	blastp_wnode_struct	https://github.com/ncbi/pgap.git Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 3384fa5776c183d33bef830696b6edc6ec55a292
	Alignment without BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl Branch/Commit ID: 742dbafb5fb103d8578f48a0576c14dd8dae3b2a