Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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PerformanceSummaryGenome_v0_1_0.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/PerformanceSummaryGenome_v0_1_0.cwl Branch/Commit ID: master |
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Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/leipzig/2020-covid-19-bh.git
Path: Ambarish_Kumar_SOP/CWL/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Branch/Commit ID: main |
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step-valuefrom2-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/step-valuefrom2-wf.cwl Branch/Commit ID: ad91c844b5adfef514c059af364e20afc935e598 |
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module-4.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/module-4.cwl Branch/Commit ID: master |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: test |
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CreateSymlink-workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: CreateSymlink-workflow.cwl Branch/Commit ID: f7894707dd30a0edd199d3b67c4c8678f64c90b3 |
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spatial transcriptomics pipeline including analysis with scanpy and squidpy
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https://github.com/hubmapconsortium/xenium-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 3b219c6 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 56dafa4 |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 8c435d7 |
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conflict-wf.cwl#collision
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/conflict-wf.cwl Branch/Commit ID: 4fd5ca5a927594c361a9320d5331b326d06cecd3 Packed ID: collision |
