Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c |
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tindaisy.cwl
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https://github.com/ding-lab/TinDaisy.git
Path: cwl/workflows/tindaisy.cwl Branch/Commit ID: 41d27deba0ca34b0cc3f3a7eefcd44d0cb7baffa |
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Raw sequence data to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_bqsr.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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process VCF workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c |
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Run genomic CMsearch (5S rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_gcmsearch.cwl Branch/Commit ID: c28cfb9882dedd3c522160f933cff1050ae24100 |
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Filter single sample sv vcf from depth callers(cnvkit/cnvnator)
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: 2ae0a374fab650757cdae4391c8cbd32f02edf97 |
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chipseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/chipseq-header.cwl Branch/Commit ID: fc6f4183b941dcf616a9146fbb369a9af0683849 |
