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Graph	Name	Retrieved From	View
	Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	status_postgres_workflow.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/status/status_postgres_workflow.cwl Branch/Commit ID: 23819c2a0dcd98b61487cbc82e602dd58cb4d342
	spurious_annot	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	Create Genomic Collection for Bacterial Pipeline, ASN.1 input	https://github.com/ncbi/pgap.git Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	spurious_annot pass2	https://github.com/ncbi/pgap.git Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	Get Proteins	https://github.com/ncbi/pgap.git Path: wf_bacterial_prot_src.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	Run genomic CMsearch (Rfam rRNA)	https://github.com/ncbi/pgap.git Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c
	Run tRNAScan	https://github.com/ncbi/pgap.git Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c