Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	wgs alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/germline_wgs_gvcf.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf_nonhuman.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c
	format_rrnas_from_seq_entry	https://github.com/ncbi/pgap.git Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 75ea689c0a8c9902b4598b453455857cb08e885a
	cache_asnb_entries	https://github.com/ncbi/pgap.git Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad
	WGS QC workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe
	kmer_cache_store	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5
	Chipseq alignment for nonhuman with qc and creating homer tag directory	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37
	FASTQ to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 174f3b239018328cec1d821947438b457552724c