Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and somatic variant detection for cle purpose
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/cle_somatic_exome.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
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default-dir5.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/default-dir5.cwl Branch/Commit ID: d3c7bd5d6c409e857b98f9034a55952ca95afdb3 |
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SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/datirium/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: 5b1d3af2b36d64c15095e62ed0ba7543369f216c |
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format_rrnas_from_seq_entry
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https://github.com/ncbi/pgap.git
Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: af468ae34c82dc88399aeedfd8f12f1e87052367 |
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MICCAI 2024 3DTeethLand Challenge Evaluation Test
this is a test |
https://github.com/osmaoui/model-to-data-challenge-workflow.git
Path: workflow_submit_json.cwl Branch/Commit ID: b63d819ba763435496e9608d0b5af304360961e9 |
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RNA-seq (VCF) alelle specific pipeline for paired-end data
Allele specific RNA-Seq (using vcf) paired-end workflow |
https://github.com/datirium/workflows.git
Path: workflows/allele-vcf-rnaseq-pe.cwl Branch/Commit ID: d6f58c383d0676269afb519399061191a1144a6a |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: be32f1363f9a9a9247d738e9593b207e9c5172c8 |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: 86fbeb95ef85111f3b4c6bc2bba8f06cef64e157 |
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TAP
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https://github.com/MG-RAST/amplicon.git
Path: CWL/Workflows/tap.prok.workflow.cwl Branch/Commit ID: 735a989b6923e9207baace2702be4554d70c92d7 |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 89098668413e90519c99b35143bffec509d3599c |
