Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	1st-workflow.cwl	https://github.com/common-workflow-language/user_guide.git Path: _includes/cwl/21-1st-workflow/1st-workflow.cwl Branch/Commit ID: fb086088825d19c1136b97dd5997a060da8d44d6
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe
	Detect Docm variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants_nonhuman.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: cd97086739ae5988bab09b05e9259675c4b6bce6
	DiffBind - Differential Binding Analysis of ChIP-Seq Peak Data Differential Binding Analysis of ChIP-Seq Peak Data --------------------------------------------------- DiffBind processes ChIP-Seq data enriched for genomic loci where specific protein/DNA binding occurs, including peak sets identified by ChIP-Seq peak callers and aligned sequence read datasets. It is designed to work with multiple peak sets simultaneously, representing different ChIP experiments (antibodies, transcription factor and/or histone marks, experimental conditions, replicates) as well as managing the results of multiple peak callers. For more information please refer to: ------------------------------------- Ross-Innes CS, Stark R, Teschendorff AE, Holmes KA, Ali HR, Dunning MJ, Brown GD, Gojis O, Ellis IO, Green AR, Ali S, Chin S, Palmieri C, Caldas C, Carroll JS (2012). “Differential oestrogen receptor binding is associated with clinical outcome in breast cancer.” Nature, 481, -4.	https://github.com/datirium/workflows.git Path: workflows/diffbind.cwl Branch/Commit ID: 9850a859de1f42d3d252c50e15701928856fe774
	LSU-from-tablehits.cwl	https://github.com/proteinswebteam/ebi-metagenomics-cwl.git Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: b6d3aaf3fa6695061208c6cdca3d7881cc45400d
	strelka workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71