Explore Workflows

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/sc_atac_seq_prep_process_init.cwl

Branch/Commit ID: ec8a7e87c40f0c98cb649d4ffa1fc52e44fffb27

https://github.com/ncbi/pgap.git

Path: task_types/tt_ani_top_n.cwl

Branch/Commit ID: da35c7b700912dd3643e3dd2c5c96b7be3a4edad

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 1.0.0

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines11-extra-step-wf.cwl

Branch/Commit ID: e515226f8ac0f7985cd94dae4a301150adae3050

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflow_modules/trim_and_map.cwl

Branch/Commit ID: master

https://github.com/EiffL/metacal-pipeline.git

Path: tools/metacal-wf.cwl

Branch/Commit ID: master

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb

Packed ID: main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut3.cwl

Branch/Commit ID: 023467ade1fef22322d36191f2d80fe21027ac2c

https://git.nfdi4plants.org/brilator/Facultative-CAM-in-Talinum.git

Path: workflows/deseq2/workflow.cwl

Branch/Commit ID: main

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/ambarishK/bio-cwl-tools.git

Path: samtoolsW.cwl

Branch/Commit ID: release