Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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spurious_annot pass2
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https://github.com/ncbi-gpipe/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: df5e285d48cbdf2e296d530a3067d41b1905e13a |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3f85843d4a6debdabe96bc800bf2a4efdcda1ef3 |
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pdf2wordcloud.cwl
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https://github.com/wilke/CWL-Quick-Start.git
Path: CWL/Workflows/pdf2wordcloud.cwl Branch/Commit ID: af44711eef08f6012827314d0d809277283eb799 |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi-gpipe/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: c402e1347732654dfd716767c95a67a72366a4ab |
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qiime2 DADA2 detect/correct sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb Packed ID: qiime2-03-dada2.cwl |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: f993cada89d2c6f7480a0d56baa7836a361b1f3a |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: giab-joint/giab-joint-workflow/wf-variantcall.cwl Branch/Commit ID: 9606af30d5f047745a1cd7ec1a59d65508ed256e |
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wf-variantcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: giab-chm/giab-chm-workflow/wf-variantcall.cwl Branch/Commit ID: 9606af30d5f047745a1cd7ec1a59d65508ed256e |
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GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl
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https://github.com/common-workflow-language/workflows.git
Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-indel-no-vqsr.cwl Branch/Commit ID: 8e841da119480fdc626dedca572e55d15f9b017f |
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Exome QC workflow
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https://github.com/MarkRobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: 0ae2468ab2ba0b9a196c2aa89b580555750bf0f6 Packed ID: workflow_exome.cwl |
