Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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metrics-flow.cwl
Run metrics workflow |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/metrics-flow.cwl Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653 |
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js-expr-req-wf.cwl#wf
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/js-expr-req-wf.cwl Branch/Commit ID: e67f19d8a713759d761ecad050966d1eb043b85c Packed ID: wf |
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Single-Cell Preprocessing Cell Ranger Pipeline
Devel version of Single-Cell Preprocessing Cell Ranger Pipeline =============================================================== |
https://github.com/datirium/workflows.git
Path: workflows/single-cell-preprocess-cellranger.cwl Branch/Commit ID: 104059e07a2964673e21d371763e33c0afeb2d03 |
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scatter-wf4.cwl#main
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/scatter-wf4.cwl Branch/Commit ID: f02557902989c749c9c2187c7045e340e2d76bfc Packed ID: main |
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Build Bowtie indices
Workflow runs [Bowtie](http://bowtie-bio.sourceforge.net/tutorial.shtml) v1.2.0 (12/30/2016) to build indices for reference genome provided in a single FASTA file as fasta_file input. Generated indices are saved in a folder with the name that corresponds to the input genome |
https://github.com/datirium/workflows.git
Path: workflows/bowtie-index.cwl Branch/Commit ID: 799575ce58746813f066a665adeacdda252d8cab |
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spurious_annot
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752 |
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tnhc-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/tnhc-distr.cwl Branch/Commit ID: 845f4699c5fce96a4c708a553b3701c9cf296653 |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223 |
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kmer_build_tree
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https://github.com/ncbi-gpipe/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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wgs alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: 3b6d0475c80f5e452793a46a38ee188742b86595 |
