Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph echo-wf-default.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/echo-wf-default.cwl

Branch/Commit ID: 4feec74019b56dc5c51be905a208ff90797661de
workflow graph io-any-wf-1.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/io-any-wf-1.cwl

Branch/Commit ID: 4feec74019b56dc5c51be905a208ff90797661de
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: low-vaf
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: caea457
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 8515542
workflow graph germline-gpu-v4.1.1.cwl

https://github.com/NCGM-genome/WGSpipeline.git

Path: Workflows/germline-gpu-v4.1.1.cwl

Branch/Commit ID: main
workflow graph rnaseq-pe-dutp.cwl

Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/rnaseq-pe-dutp.cwl

Branch/Commit ID: master
workflow graph sc_atac_seq_prep_process_init.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/sc_atac_seq_prep_process_init.cwl

Branch/Commit ID: ec8a7e87c40f0c98cb649d4ffa1fc52e44fffb27
workflow graph ani_top_n

https://github.com/ncbi/pgap.git

Path: task_types/tt_ani_top_n.cwl

Branch/Commit ID: da35c7b700912dd3643e3dd2c5c96b7be3a4edad
workflow graph annotator_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 1.0.0