Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 509938802c5e42bb8084c6a5a26ab6425c60e69a
	Creates FASTA file from BED coordinates This workflow creates FASTA file from BED coordinates	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/File-formats/fasta-from-bed.cwl Branch/Commit ID: e541470bc9d0b064bc4ed7dd2b45d8ec67760613
	trick_revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/trick_revsort.cwl Branch/Commit ID: 78fe9d41ee5a44f8725dfbd7028e4a5ee42949cf
	Nested workflow example	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/nested.cwl Branch/Commit ID: aec33fcfa3459a90cbba8c88ebb991be94d21429
	process VCF workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 2e0562a5c3cd7aac24af4c622a5ae68a7fb23a71
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: f2bd4687f06f85ea848b6f1ce04ec97f48525334
	exome_metrics.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/bamfastq_align/exome_metrics.cwl Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b
	chip-seq-alignment.cwl	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-Seq/chip-seq-alignment.cwl Branch/Commit ID: e541470bc9d0b064bc4ed7dd2b45d8ec67760613
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5
	snaptools_create_snap_file.cwl	https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git Path: steps/snaptools_create_snap_file.cwl Branch/Commit ID: 4b2af54638bc471ee3e14e5f49546a2b6860804e