Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/datirium/workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: 64f7fe4438898218fd83133efa25251078f5b27e
workflow graph extract_readgroups_bam.cwl

https://github.com/NCI-GDC/gdc-mirnaseq-cwl.git

Path: workflows/mirnaseq_automation/extract_readgroups_bam.cwl

Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3
workflow graph format_rrnas_from_seq_entry

https://github.com/ncbi/pgap.git

Path: task_types/tt_format_rrnas_from_seq_entry.cwl

Branch/Commit ID: 1a6b9e5dea09caa0debbaff30ca39005dfa5e4d4
workflow graph prepare_reference.cwl

https://github.com/nigyta/rice_reseq.git

Path: workflows/prepare_reference.cwl

Branch/Commit ID: 356c47bb87dbcd9a9cb565f147b0dad298dea6cb
workflow graph scatter-valuefrom-wf5.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/scatter-valuefrom-wf5.cwl

Branch/Commit ID: 4d06b9efd26c5813c13684ebcc95547bb75ddfcc
workflow graph WGS QC workflow mouse

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs_mouse.cwl

Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd
workflow graph RD_Connect

https://github.com/inab/Wetlab2Variations.git

Path: cwl-workflows/demonstrator/workflow_localfiles_formatted.cwl

Branch/Commit ID: f91932a1de164c8493db34014aa4e335a4e347dd
workflow graph phase VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/phase_vcf.cwl

Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
workflow graph umi molecular alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
workflow graph align_merge_sas

https://github.com/ncbi/pgap.git

Path: task_types/tt_align_merge_sas.cwl

Branch/Commit ID: 1a6b9e5dea09caa0debbaff30ca39005dfa5e4d4