Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Apply filters to VCF file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: 891c996dbd23d8154ec7609a56da3de841ae124c
	HS Metrics workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c
	trick_revsort.cwl Reverse the lines in a document, then sort those lines.	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/trick_revsort.cwl Branch/Commit ID: 520acbfb82455c4bdabd5f2ea24842804e1c9f58
	if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl	https://github.com/cancerit/workflow-seq-import.git Path: cwls/if_input_is_bz2_generate_md5sum_else_return_input_chksum_json.cwl Branch/Commit ID: f63e0781e85d2efc0ae8900548e858813da0b53b
	adapter for sequence_align_and_tag Some workflow engines won't stage files in our nested structure, so parse it out here	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c
	basic_example.cwl	https://github.com/inab/vre_cwl_executor.git Path: tests/basic/data/workflows/basic_example.cwl Branch/Commit ID: 4c1432ba1444cc9fb3c0cd145113ef16b4100931
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
	count-lines1-wf-noET.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/count-lines1-wf-noET.cwl Branch/Commit ID: 4d06b9efd26c5813c13684ebcc95547bb75ddfcc
	qiime2 identify differentially abundant features Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/	https://github.com/bespin-workflows/16s-qiime2.git Path: subworkflows/qiime2-09-ancom.cwl Branch/Commit ID: a6a7d5bd034f8ccf01b809bc9f5ecf87e5c5652c
	exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: 74647cc0f1abac4ee22950cfa89c44cf2ca3cffd