Explore Workflows

https://github.com/genome/cancer-genomics-workflow.git

Path: rnaseq/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: e027d487e5cefba4f446f2036b933955608dbc31

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroup_fastq_se.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-bam.cwl

Branch/Commit ID: 91d67820264c8ebac829174cb1d0c7c5e30c613f

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: preprocess_vcf.cwl

Branch/Commit ID: b4a02b7ba5733b3cc5b84b79ab0634ff9e4d1aeb

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroup_fastq_se.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/griffithlab/regtools-cwl.git

Path: regtools/workflow.cwl

Branch/Commit ID: c25ff825502cd51dbcf5aa72525ca9890cf8d70c

ChIP-seq - map - PCR Bottleneck Coefficients

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/map/pcr-bottleneck-coef.cwl

Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065

ChIP-seq - map - PCR Bottleneck Coefficients

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/map/pcr-bottleneck-coef.cwl

Branch/Commit ID: 067e518c3e3a7488e2aaa0b0b269be87d18fc99e

https://doi.org/10.1007/s12275-011-1213-z

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 56dafa4dab5892c5afa35713563dddc78ec5a00d

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: bcfe5f9affd23d52467f69b4b21d1098f0ca95d7