Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	CODEX analysis pipeline using Cytokit	https://github.com/hubmapconsortium/codex-pipeline.git Path: steps/ometiff_second_stitching.cwl Branch/Commit ID: b23af942f4a1169fc3d331272fd56ae878af6c1d
	THOR - differential peak calling of ChIP-seq signals with replicates What is THOR? -------------- THOR is an HMM-based approach to detect and analyze differential peaks in two sets of ChIP-seq data from distinct biological conditions with replicates. THOR performs genomic signal processing, peak calling and p-value calculation in an integrated framework. For more information please refer to: ------------------------------------- Allhoff, M., Sere K., Freitas, J., Zenke, M., Costa, I.G. (2016), Differential Peak Calling of ChIP-seq Signals with Replicates with THOR, Nucleic Acids Research, epub gkw680.	https://github.com/datirium/workflows.git Path: workflows/rgt-thor.cwl Branch/Commit ID: 9850a859de1f42d3d252c50e15701928856fe774
	kmer_build_tree	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 02816f0d66e36c8eeba02d211cc90e36bf1c9df5
	bam_readcount workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f
	hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe
	exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37
	workflow.cwl	https://github.com/NAL-i5K/Organism_Onboarding.git Path: flow_download/workflow.cwl Branch/Commit ID: 0b58c250e8ab7c5efae29443f08ea74316127041
	foreign_screening.cwl	https://github.com/ncbi/pgap.git Path: vecscreen/foreign_screening.cwl Branch/Commit ID: e2a6cbcc36212433d8fbc804919442787a5e2a49
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a