Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Detect Variants workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
	pipeline.cwl	https://github.com/hubmapconsortium/ims-mxif-pipeline.git Path: pipeline.cwl Branch/Commit ID: 6915b8bbefdc8302c6041c4d795dd4c3fa8a9f4c
	01-qc-se.cwl RNA-seq 01 QC - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: bed420556091b7b8b45cf20a95e5947e1de9a416
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f
	transform.cwl	https://github.com/NCI-GDC/gdc-dnaseq-cwl.git Path: workflows/fastq_readgroup_stats/transform.cwl Branch/Commit ID: 1046947f8d2923e6563b3aceac9e435554c5bea1
	Add snv and indel bam-readcount files to a vcf	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f
	exome alignment and germline variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec
	wf_full_IDR_pipeline_1input_scatter.cwl The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic	https://github.com/YeoLab/merge_peaks.git Path: cwl/wf_full_IDR_pipeline_1input_scatter.cwl Branch/Commit ID: fadfca0f6da710104c4cf7931e9ab2656f5f737d