Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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bacterial_orthology
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![]() Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 45d134ce3d436c53637a2d83755e9b4613267e9f |
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word-mapping-test-files-wf.cwl#align-texts-wf.cwl
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![]() Path: ochre/cwl/word-mapping-test-files-wf.cwl Branch/Commit ID: bfd504ae910fbf7a3492f53430a1c9f3c3c97470 Packed ID: align-texts-wf.cwl |
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exome alignment with qc, no bqsr, no verify_bam_id
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![]() Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325 |
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1st-workflow.cwl
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![]() Path: _includes/cwl/21-1st-workflow/1st-workflow.cwl Branch/Commit ID: fb086088825d19c1136b97dd5997a060da8d44d6 |
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Apply filters to VCF file
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![]() Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: da335d9963418f7bedd84cb2791a0df1b3165ffe |
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Detect Docm variants
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![]() Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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![]() Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
![]() Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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Detect Variants workflow
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![]() Path: definitions/pipelines/detect_variants_nonhuman.cwl Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325 |
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tt_univec_wnode.cwl
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![]() Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: cd97086739ae5988bab09b05e9259675c4b6bce6 |