Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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taxonomy_check_16S
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_taxonomy_check_16S.cwl Branch/Commit ID: 7ebb8d2757914d16520b00571a281e2ad86a42cf |
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tt_kmer_compare_wnode
Pairwise comparison |
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65 |
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exome alignment and germline variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470 |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: a59a803e1809a8fbfabca6b8962a8ad66dd01f1d |
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align_sort_sa
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982 |
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varscan somatic workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 891c996dbd23d8154ec7609a56da3de841ae124c |
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STAR-RNA-Seq alignment and transcript/gene abundance workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq_star_fusion.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f |
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workflow.cwl
|
https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_dispatch/2blat/workflow.cwl Branch/Commit ID: 677d79c721ad5f7a7e09b693d7f3fe2da70826e2 |
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env-wf3.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/env-wf3.cwl Branch/Commit ID: 0e37d46e793e72b7c16b5ec03e22cb3ce1f55ba3 |
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bact_get_kmer_reference
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: f6950321e5c9ee733ad68a273d2ad8e802a6b982 |