Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	tt_hmmsearch_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: bc0f1f147231c759fb2d5ff99f41b2667a5588ad
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 0b6e8fd8ead7644cf5398395b76af5cf4011686f
	sec-wf-out.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/sec-wf-out.cwl Branch/Commit ID: 78fe9d41ee5a44f8725dfbd7028e4a5ee42949cf
	workflow.cwl	https://github.com/reanahub/reana-demo-cms-h4l.git Path: workflow/workflow.cwl Branch/Commit ID: beab8c28eef9b2670117ae38c776499b503c1ea3
	hi-c-processing-pairs.cwl	https://github.com/mr-c/4dn-dcic-pipelines-cwl.git Path: cwl_awsem_v1/hi-c-processing-pairs.cwl Branch/Commit ID: 895a101d06c26f8c7f8a63545b2b74921b5f7526
	wgs alignment and tumor-only variant detection	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8
	umi duplex alignment workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae
	gather AML trio outputs	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a
	assm_assm_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 42712bca4c3307d87b6b55f525a4c97cb6f7e288
	joint genotyping for trios or small cohorts	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/joint_genotype.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f