Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
assm_assm_blastn_wnode
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 1e7aa9f0c34987ddafa35f9b1d2c77d99fafbdab |
||
exome alignment and germline variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 9cbf2a483e1b9e4cdb8e2564be27a9e64fc1169e |
||
collate_unique_SSU_headers.cwl
|
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3f85843d4a6debdabe96bc800bf2a4efdcda1ef3 |
||
functional analysis prediction with InterProScan
|
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: 3f85843d4a6debdabe96bc800bf2a4efdcda1ef3 |
||
zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: b4a02b7ba5733b3cc5b84b79ab0634ff9e4d1aeb |
||
contam_euk.cwl
|
https://github.com/NCBI-Hackathons/ContamFilter.git
Path: cwl/workflow/contam_euk.cwl Branch/Commit ID: b86d7a9d2181c61064431a8a1bf33e6dfea08378 |
||
bam-genomecov-bigwig.cwl
creates genome coverage bigWig file from .bam file |
https://github.com/barski-lab/ga4gh_challenge.git
Path: workflows/bam-genomecov-bigwig.cwl Branch/Commit ID: b1c723fe94cda2d19efc7f792970a31413640d59 |
||
running cellranger mkfastq and count
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 18600518ce6539a2e29c1707392a4c5da5687fa3 |
||
step-valuefrom-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/step-valuefrom-wf.cwl Branch/Commit ID: 0e37d46e793e72b7c16b5ec03e22cb3ce1f55ba3 |
||
vector_cleanup
This workflow detect and remove vectors from a DNA fasta file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Contamination/vector-cleanup.cwl Branch/Commit ID: 11f70a71cb68b3960c2d410ba1fdcd3b8a7e1419 |