Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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cellpose.cwl
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https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git
Path: steps/cellpose.cwl Branch/Commit ID: e7f46046a7338b6a2bb914e263278ea9c0207326 |
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psortedDefaultParams.cwl
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https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git
Path: steps/psortedDefaultParams.cwl Branch/Commit ID: e7f46046a7338b6a2bb914e263278ea9c0207326 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: ae57b60e9b01e3f0f02f4e828042748409dff5a3 |
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processing.cwl
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https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git
Path: steps/processing.cwl Branch/Commit ID: e7f46046a7338b6a2bb914e263278ea9c0207326 |
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exome alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533 |
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starfishRunner.cwl
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https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git
Path: steps/starfishRunner.cwl Branch/Commit ID: e7f46046a7338b6a2bb914e263278ea9c0207326 |
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phase VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: a23f42ef49c10a588fd35a3afaad5de03e253533 |
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baysorStaged.cwl
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https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git
Path: steps/baysorStaged.cwl Branch/Commit ID: e7f46046a7338b6a2bb914e263278ea9c0207326 |
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sequence (bam or fastqs) to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 8da2b1cd6fa379b2c22baf9dad762d39630e6f46 |
