Explore Workflows

Single-cell RNA-Seq Alignment Runs Cell Ranger Count to quantify gene expression from a single-cell RNA-Seq library.

https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-rna-align-wf.cwl

Branch/Commit ID: main

https://github.com/wilke/CWL-Quick-Start.git

Path: CWL/Workflows/pdf2wordcloud.cwl

Branch/Commit ID: master

This demonstrates how to wrap a \"real\" tool with a checker workflow that runs both the tool and a tool that performs verification of results

https://github.com/dockstore-testing/md5sum-checker.git

Path: checker-workflow-wrapping-workflow.cwl

Branch/Commit ID: develop

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_bamstats_module.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 0fed1c9

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/io-file-default-wf.cwl

Branch/Commit ID: master

https://gitlab.ebrains.eu/sofiakar/yre-standardised-workflows.git

Path: Workflows/PSD_workflow_bucket_1/workflow.cwl

Branch/Commit ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: 5833078

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/word-mapping-dir.cwl

Branch/Commit ID: master

Packed ID: main