Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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AltAnalyze cell-level matching and comparison of single-cell transcriptomes
Devel version of AltAnalyze CellHarmony ======================================= cellHarmony is a cell-matching algorithm designed to identify a cell's most similar analogue in a distinct single-cell RNA-Seq (scRNA-Seq) dataset and find differentially expressed genes in each cell population. |
https://github.com/datirium/workflows.git
Path: workflows/altanalyze-cellharmony.cwl Branch/Commit ID: a8eaf61c809d76f55780b14f2febeb363cf6373f |
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collate_unique_SSU_headers.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 7bb76f33bf40b5cd2604001cac46f967a209c47f |
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EMG assembly for paired end Illumina
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: ca6ca613f0d3728d9589a6ca6293e66dfde87bfb |
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Filter ChIP/ATAC peaks for Tag Density Profile or Motif Enrichment analyses
Filters ChIP/ATAC peaks with the neatest genes assigned for Tag Density Profile or Motif Enrichment analyses ============================================================================================================ Tool filters output from any ChIP/ATAC pipeline to create a file with regions of interest for Tag Density Profile or Motif Enrichment analyses. Peaks with duplicated coordinates are discarded. |
https://github.com/datirium/workflows.git
Path: workflows/filter-peaks-for-heatmap.cwl Branch/Commit ID: a8eaf61c809d76f55780b14f2febeb363cf6373f |
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sequence (bam or fastqs) to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/sequence_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 889a077a20c0fdb01f4ed97aa4bc40f920c37a1a |
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Cut-n-Run pipeline paired-end
Experimental pipeline for Cut-n-Run analysis. Uses mapping results from the following experiment types: - `chipseq-pe.cwl` - `trim-chipseq-pe.cwl` - `trim-atacseq-pe.cwl` Note, the upstream analyses should not have duplicates removed |
https://github.com/datirium/workflows.git
Path: workflows/trim-chipseq-pe-cut-n-run.cwl Branch/Commit ID: a8eaf61c809d76f55780b14f2febeb363cf6373f |
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count-lines1-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines1-wf-noET.cwl Branch/Commit ID: 0e37d46e793e72b7c16b5ec03e22cb3ce1f55ba3 |
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schemadef-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/schemadef-wf.cwl Branch/Commit ID: 0e37d46e793e72b7c16b5ec03e22cb3ce1f55ba3 |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_create_genomics-workspace_yml/flow_create_yml/workflow.cwl Branch/Commit ID: 677d79c721ad5f7a7e09b693d7f3fe2da70826e2 |
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format_rrnas_from_seq_entry
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https://github.com/ncbi/pgap.git
Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 92118627c800e4addb7e29b9dabcca073a5bae71 |