Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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kmer_cache_retrieve
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![]() Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 7c8eb4d23c3c9859f57421643710c0b6d57b606c |
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Decompress
Decompress mate pair fastq files |
![]() Path: CWL/Workflows/decompress_mate_pair.workflow.cwl Branch/Commit ID: 735a989b6923e9207baace2702be4554d70c92d7 |
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scatter GATK HaplotypeCaller over intervals
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![]() Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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Unaligned to aligned BAM
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![]() Path: definitions/subworkflows/align.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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WGS QC workflow nonhuman
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![]() Path: definitions/subworkflows/qc_wgs_nonhuman.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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running cellranger mkfastq and count
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![]() Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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umi per-lane alignment subworkflow
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![]() Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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CLE gold vcf evaluation workflow
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![]() Path: definitions/subworkflows/vcf_eval_cle_gold.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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downsample unaligned BAM and align
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![]() Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |
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Running cellranger count and lineage inference
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![]() Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2 |