Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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gathered exome alignment and somatic variant detection
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![]() Path: definitions/pipelines/somatic_exome_gathered.cwl Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8 |
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echo-wf-default.cwl
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![]() Path: v1.0/v1.0/echo-wf-default.cwl Branch/Commit ID: f02557902989c749c9c2187c7045e340e2d76bfc |
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readgroup_fastq_se.cwl
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![]() Path: workflows/mirnaseq_automation/readgroup_fastq_se.cwl Branch/Commit ID: 963f6d502da2c4f152c1654e94008ccf8f6d0db3 |
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gather AML trio outputs
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![]() Path: definitions/pipelines/aml_trio_cle_gathered.cwl Branch/Commit ID: 54846feabbf008c1946db2a86d87252e0edd95b0 |
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kmer_cache_retrieve
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![]() Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 42712bca4c3307d87b6b55f525a4c97cb6f7e288 |
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count-lines1-wf.cwl
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![]() Path: tests/wf/count-lines1-wf.cwl Branch/Commit ID: 83038feb2a6fc3bab952e1ecc2a11bfbc8c557b4 |
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exome alignment with qc, no bqsr, no verify_bam_id
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![]() Path: definitions/pipelines/alignment_exome_nonhuman.cwl Branch/Commit ID: 8c4e7372247a7f4ed9ed478ef8ea1d239bc88af0 |
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BD Rhapsody™ WTA Analysis Pipeline
The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
![]() Path: v1.8/rhapsody_wta_1.8.cwl Branch/Commit ID: b9ec66d82bc04934fbe9f9088ae7e802d72c4a4e Packed ID: main |
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Apply filters to VCF file
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![]() Path: definitions/subworkflows/filter_vcf_mouse.cwl Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8 |
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kmer_cache_store
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![]() Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 2229f26ec424f9ebeb3db7fec3bd3f84a38c7485 |