Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 1a8c6bc41c83476a5496bbaca5c3d870cfd8c21e |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bwa_mem.cwl Branch/Commit ID: 1a8c6bc41c83476a5496bbaca5c3d870cfd8c21e |
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genomics-workspace-cds.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-cds.cwl Branch/Commit ID: c6077d2756e628f469b446e1584ac8a86582d729 |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 1a8c6bc41c83476a5496bbaca5c3d870cfd8c21e |
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rnaseq-alignment-quantification
This workflow retrieve SRA fastqc data and execute QC, alignment and quantification from TPMCalculator |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/RNA-Seq/rnaseq-alignment-quantification.cwl Branch/Commit ID: 11f70a71cb68b3960c2d410ba1fdcd3b8a7e1419 |
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Vcf concordance evaluation workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/vcf_eval_concordance.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086 |
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bacterial_orthology
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 369afa7090a7480e6a0b144eff967a4a52b6fde2 |
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MoveData-workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: MoveData-workflow.cwl Branch/Commit ID: c6077d2756e628f469b446e1584ac8a86582d729 |
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kfdrc_bwamem_subwf.cwl
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https://github.com/kids-first/kf-alignment-workflow.git
Path: workflows/dev/ultra-opt/kfdrc_bwamem_subwf.cwl Branch/Commit ID: fc947e792856747f8dbd78811ee105dbd736bea6 |