Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
---|---|---|---|
workflow.cwl
|
https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_download/workflow.cwl Branch/Commit ID: c6077d2756e628f469b446e1584ac8a86582d729 |
||
Unaligned to aligned BAM
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/align.cwl Branch/Commit ID: f42c889734c8f709ad2fd9090493bcaac8326c98 |
||
cnv_codex
CNV CODEX2 calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_codex.cwl Branch/Commit ID: 1a8c6bc41c83476a5496bbaca5c3d870cfd8c21e |
||
bact_get_kmer_reference
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: b38b0070edf910984f29a4a495b5dfa525b8b305 |
||
samtools_sort
|
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/samtools_sort.cwl Branch/Commit ID: 1a8c6bc41c83476a5496bbaca5c3d870cfd8c21e |
||
workflow.cwl
|
https://github.com/nal-i5k/organism_onboarding.git
Path: flow_apollo2_data_processing/processing/workflow.cwl Branch/Commit ID: c6077d2756e628f469b446e1584ac8a86582d729 |
||
SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/datirium/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: 4a5c59829ff8b9f3c843e66e3c675dcd9c689ed5 |
||
somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f |
||
downsample unaligned BAM and align
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470 |
||
variant-calling-pair.cwl
|
https://github.com/mskcc/argos-cwl.git
Path: modules/pair/variant-calling-pair.cwl Branch/Commit ID: 54c9e02751dc65607f0e334c0eb1a5e646cc71d6 |