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Path: structuralvariants/workflow.cwl
Branch/Commit ID: c494fa4f60d9215842c4d2c75ed7d89757435b0f
Quality Control and Raw Data trimming
Path: structuralvariants/subworkflows/trimmed_fastq.cwl
Branch/Commit ID: c3fd9c28e495c9bb7e3a8db53ed564b18d718b2a
CNV CODEX2 calling
Path: structuralvariants/subworkflows/cnv_codex.cwl
Branch/Commit ID: c84d205c8239b7dea9d1b49e3e166973c3ebcd66
CNV ExomeDepth calling
Path: structuralvariants/subworkflows/cnv_exome_depth.cwl
Path: definitions/pipelines/aml_trio_cle.cwl
Branch/Commit ID: 35e6b3ef71b4a2a9caba1dbd5dc424a8809bcc0a
Path: structuralvariants/subworkflows/samtools_sort.cwl
Path: task_types/tt_bact_get_kmer_reference.cwl
Branch/Commit ID: 90a321ecf2d049330bcf0657cc4d764d2c3f42dd
CNV Manta calling
Path: structuralvariants/subworkflows/cnv_manta.cwl
Final filtering
Path: structuralvariants/subworkflows/final_filtering.cwl
Path: structuralvariants/subworkflows/bwa_mem.cwl