Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 33dcc054a8718edad26440f085d73b7c5d7b7871 |
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bams2gvcf.woBQSR_female_chrX_wXTR.multisapmles.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_female_chrX_wXTR.multisapmles.cwl Branch/Commit ID: a1c9cd63c80122d6a831059cdb73ec9a9455af6f |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 77a9fa25b89ce73582a1ce6ba75fa6d2537fb8e8 |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 953d7866bc70e14c02a6bb8c5a72305caa823bfc |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 953d7866bc70e14c02a6bb8c5a72305caa823bfc |
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pipeline.cwl
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https://github.com/hubmapconsortium/ims-mxif-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 03b64703561d12e780d3608079f803dac0d7b5c8 |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae |
