Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 0864e19de6a1732a1376c6a64a93794d2fc45d23 |
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HBA_target.cwl
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https://git.astron.nl/eosc/prefactor3-cwl.git
Path: workflows/HBA_target.cwl Branch/Commit ID: f57bc19c900dc371dfcc89454cb2007ac90b3258 |
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wf_fastqc.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_fastqc.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256 |
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Filter Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_align_filter.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bwa_mem.cwl Branch/Commit ID: 0864e19de6a1732a1376c6a64a93794d2fc45d23 |
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Seurat Cluster
Seurat Cluster ============== Runs filtering, integration, and clustering analyses for Cell Ranger Count Gene Expression or Cell Ranger Aggregate experiments. |
https://github.com/datirium/workflows.git
Path: workflows/seurat-cluster.cwl Branch/Commit ID: 8049a781ac4aae579fbd3036fa0bf654532f15be |
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VIRTUS.SE.singlevirus.cwl
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https://github.com/yyoshiaki/VIRTUS.git
Path: workflow/VIRTUS.SE.singlevirus.cwl Branch/Commit ID: 16dbe9d99137cbfee834fc22b79190f812543f7e |
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Filter Protein Seeds; Find ProSplign Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: 43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a |
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cnv_gridss
CNV GRIDSS calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_gridss.cwl Branch/Commit ID: 0864e19de6a1732a1376c6a64a93794d2fc45d23 |