Explore Workflows

https://github.com/YangYang-Lcos/legacy.git

Path: workflows/compile/compile1.cwl

Branch/Commit ID: master

Packed ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 3039744

This workflow takes the PeptideProphet, and the ProteinProphet output files, and applies a stringent False Discovery Rate (FDR) filtering. Peptide and proteins are filtered individually at 1% FDR. The high-quality PSMs, peptides, and proteins are then quantified using a label-free algorithm that uses the apex peak intensity as a measurement. Finally, the isobaric tags are quantified and annotated with the correct sample labels.

https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe-Filter-Quant-Report/fragpipe-filter-quant-report.cwl

Branch/Commit ID: main

https://github.com/ncbi/pgap.git

Path: vecscreen/bacterial_screening.cwl

Branch/Commit ID: master

This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs

https://github.com/david4096/OxoG-Dockstore-Tools.git

Path: qa_check_subwf.cwl

Branch/Commit ID: develop

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/detect_variants_mouse.cwl

Branch/Commit ID: downsample_and_recall

https://github.com/mdaya/hla_la_typing.git

Path: HLA_LA_workflow.cwl

Branch/Commit ID: master

https://github.com/yyoshiaki/cwl_user_guide.git

Path: kallisto/kallisto-pe-workflow.cwl

Branch/Commit ID: master

This workflow essentially restructures the inputs before sending to wf_full_IDR_pipeline_2inputs.cwl

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_full_IDR_pipeline_2inputs_sample.cwl

Branch/Commit ID: master

https://github.com/ebi-jdispatcher/webservice-cwl.git

Path: workflows/workflow-transeq-blast-clustalo.cwl

Branch/Commit ID: master