Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Subworkflow that runs cnvkit in single sample mode and returns a vcf file	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0
	bact_get_kmer_reference	https://github.com/ncbi/pgap.git Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 47ccbd0bc7b45bf8b3c92d0a66c1a9a232367a5d
	FASTQ to BQSR	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
	03-map-pe.cwl ATAC-seq 03 mapping - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3
	step-valuefrom2-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/step-valuefrom2-wf.cwl Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b
	WGS QC workflow mouse	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 47ccbd0bc7b45bf8b3c92d0a66c1a9a232367a5d
	strelka workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: cfdcd0735e8fb1ac0b97f1a5cbe0cc7e00033dd0
	Hello World Outputs a message using echo	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/hello-workflow.cwl Branch/Commit ID: d7481d03fa4b5b4630392540f598acfb100b421d
	Detect DoCM variants	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: 31602b94b34ff55876147c7299e1bec47e8d1a31