Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086
	align_sort_sa	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 97330968839983824a11ac32dff981d8ecb00955
	Unaligned bam to sorted, markduped bam	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align_sort_markdup.cwl Branch/Commit ID: 9a657bc8c462542dc7f57fba9e04dc1669f966ba
	cram_to_bam workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086
	Gene expression merge - combines RPKM gene expression from several experiments Gene expression merge - combines RPKM gene expression from several experiments =================================================================================== Workflows merges RPKM gene expression from several experiments based on the values from GeneId, Chrom, TxStart, TxEnd and Strand columns. Reported RPKM columns are renamed based on the experiments names.	https://github.com/datirium/workflows.git Path: workflows/feature-merge.cwl Branch/Commit ID: 7fb8a1ebf8145791440bc2fed9c5f2d78a19d04c
	SoupX - an R package for the estimation and removal of cell free mRNA contamination Devel version of Single-Cell Advanced Cell Ranger Pipeline (SoupX) =================================================================	https://github.com/datirium/workflows.git Path: workflows/soupx.cwl Branch/Commit ID: 4a5c59829ff8b9f3c843e66e3c675dcd9c689ed5
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: 1750cd5cc653f058f521b6195e3bec1e7df1a086
	A workflow that aligns a fasta file and provides statistics on the SAM file A workflow that aligns a fasta file and provides statistics on the SAM file	https://github.com/svonworl/multi-step-cwl.git Path: version_1_2/sub_workflow_metrics.cwl Branch/Commit ID: 26287c69fcbf4b9d7021a393119503cb47105804
	scatter-valuefrom-wf4.cwl#main	https://github.com/common-workflow-language/cwltool.git Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf4.cwl Branch/Commit ID: 7bfe73a708dbf31d037303bb5a8fed1a79984b0f Packed ID: main
	heatmap.cwl Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension	https://github.com/Barski-lab/workflows.git Path: workflows/heatmap.cwl Branch/Commit ID: 80d64741638b14de5cf58236b6d6d99713c62086