Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Chipseq alignment for nonhuman with qc and creating homer tag directory
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl Branch/Commit ID: a08de598edc04f340fdbff76c9a92336a7702022 |
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CNV_FPS
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/workflow.cwl Branch/Commit ID: 5cc8306ce84c027db4c092077983294557213136 |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: 637e294ff72687314faacef2c30cb46874611e50 |
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cnv_gridss
CNV GRIDSS calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_gridss.cwl Branch/Commit ID: e1fd26587a78afc376c10bf6db36abd2c840768e |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b |
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cnv_codex
CNV CODEX2 calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_codex.cwl Branch/Commit ID: 70eec658fd1b92c4d0e3b24146820010b5983d41 |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 9af9cb1f5e65c2d10e0f1611a9a2f913ef206928 |
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workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_create_genomics-workspace_yml/flow_create_yml/workflow.cwl Branch/Commit ID: 89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945 |
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workflow-ebisearch.cwl
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https://github.com/ebi-wp/webservice-cwl.git
Path: workflows/workflow-ebisearch.cwl Branch/Commit ID: 5df6b762980b15b0f6389149311b82bdd6dff37d |
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wf_trim_and_map_pe.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_trim_and_map_pe.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256 |