Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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cnv_gridss
CNV GRIDSS calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_gridss.cwl Branch/Commit ID: d07f44fc5c253dc4044d86ea79ac6f9e03c01bfa |
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genomics-workspace-protein.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-protein.cwl Branch/Commit ID: 89cff9f0d36a23bf57b3f4bdbd3ed57e3347c945 |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31 |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 86f2f3fb64e916607637d93cf6715bab90b1f1d3 |
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workflow-fasta-pratt.cwl
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https://github.com/ebi-wp/webservice-cwl.git
Path: workflows/workflow-fasta-pratt.cwl Branch/Commit ID: 5df6b762980b15b0f6389149311b82bdd6dff37d |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: f9600f9959acdc30259ba7e64de61104c9b01f0b |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747 |
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Non-Coding Bacterial Genes
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 609aead9804a8f31fa9b3dbc7e52105aec487f31 |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/baminou/OxoG-Dockstore-Tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: 95da3d32ee8787361333b2eea09afb8f9c3392a9 |