Explore Workflows
View already parsed workflows here or click here to add your own
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SoupX - an R package for the estimation and removal of cell free mRNA contamination
Devel version of Single-Cell Advanced Cell Ranger Pipeline (SoupX) ================================================================= |
![]() Path: workflows/soupx.cwl Branch/Commit ID: e0a30aa1ad516dd2ec0e9ce006428964b840daf4 |
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kmer_cache_store
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![]() Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47 |
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env-wf1.cwl
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![]() Path: v1.0/v1.0/env-wf1.cwl Branch/Commit ID: f02557902989c749c9c2187c7045e340e2d76bfc |
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cram_to_bam workflow
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![]() Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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drep-subwf.cwl
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![]() Path: workflows/sub-wf/drep-subwf.cwl Branch/Commit ID: 30964ec81217dfd6c758b31d0b0b27ce6ac4c2df |
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Run pindel on provided region
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![]() Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 77ec4f26eb14ed82481828bd9f6ef659cfd8b40f |
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count-lines12-wf.cwl
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![]() Path: v1.0/v1.0/count-lines12-wf.cwl Branch/Commit ID: f02557902989c749c9c2187c7045e340e2d76bfc |
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WGS QC workflow mouse
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![]() Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: adcae308fdccaa1190083616118dfadb4df65dca |
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metrics.cwl
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![]() Path: workflows/dnaseq/metrics.cwl Branch/Commit ID: 1326fb7fedca91a274fb7596c9052a4d279eacf9 |
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umi molecular alignment fastq workflow
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![]() Path: definitions/pipelines/alignment_umi_molecular.cwl Branch/Commit ID: 233f026ffce240071edda526391be0c03186fce8 |